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Hierarchy For All Packages
Package Hierarchies:
distance
,
executable
,
fingerprinters
,
fingerprinters.features
,
fingerprinters.geometrical
,
fingerprinters.topological
,
fingerprinters.topological.features
,
io
,
io.reader
,
io.writer
,
tools.algorithms
,
tools.moltyping
,
tools.moltyping.enumerations
,
tools.moltyping.pharmacophore
,
tools.progressbar
,
tools.tree.trie
,
tools.tree.trie.gml
,
tools.tree.trie.pattern
Class Hierarchy
java.lang.Object
tools.progressbar.
AbstractProgressBar
(implements java.io.Serializable)
tools.progressbar.
ProgressBar
fingerprinters.
CombinatorialPatternHelper
tools.tree.trie.gml.
ConstantsYEditColor
fingerprinters.topological.features.
DanglingBond
fingerprinters.topological.
DepthFirstSearch.DepthFirstSearchFeature
distance.
DistanceFactory
distance.
DistanceMinMax
(implements distance.
IDistanceMeasure
)
distance.
DistanceTanimoto
(implements distance.
IDistanceMeasure
)
fingerprinters.topological.features.
ECFPFeature
(implements fingerprinters.features.
IFeature
)
fingerprinters.topological.
Encoding2D.PathFeature
fingerprinters.
EncodingFingerprint
fingerprinters.topological.
Encoding2D
fingerprinters.topological.
DepthFirstSearch
fingerprinters.topological.
Encoding2DAllPaths
fingerprinters.topological.
Encoding2DAllShortestPath
fingerprinters.topological.
Encoding2DAtomPair
fingerprinters.topological.
Encoding2DAtomTriple
fingerprinters.topological.
Encoding2DCATS
fingerprinters.topological.
Encoding2DExtendedConnectivity
fingerprinters.topological.
Encoding2DLocalAtomEnvironment
fingerprinters.topological.
Encoding2DMolprint
fingerprinters.topological.
Encoding2DPharmacophore2Point
fingerprinters.topological.
Encoding2DPharmacophore3Point
fingerprinters.topological.
Encoding2DSHEDKey
fingerprinters.geometrical.
Encoding3D
fingerprinters.geometrical.
Encoding3DAtomPair
fingerprinters.geometrical.
Encoding3DAtomTriple
fingerprinters.geometrical.
Encoding3DCATS
fingerprinters.geometrical.
Encoding3DMolprint
fingerprinters.geometrical.
Encoding3DPharmacophore2Point
fingerprinters.geometrical.
Encoding3DPharmacophore3Point
tools.moltyping.enumerations.
EnumerationsAtomTypes
tools.moltyping.enumerations.
EnumerationsBondType
tools.moltyping.enumerations.
EnumerationsDistanceType
io.writer.
ExporterBenchmark
(implements io.writer.
IExporter
)
io.writer.
ExporterFactory
io.writer.
ExporterFullFingerprintCSV
(implements io.writer.
IExporter
)
io.writer.
ExporterHelper
io.writer.
ExporterLIBSVMMatrix
(implements io.writer.
IExporter
)
io.writer.
ExporterLinear
(implements io.writer.
IExporter
)
io.writer.
ExporterHashLinear
io.writer.
ExporterHashWeka
io.writer.
ExporterLIBSVMSparse
io.writer.
ExporterKeyWeka
io.writer.
ExporterSparseString
(implements io.writer.
IExporter
)
tools.moltyping.
ExtendedAtomAndBondTyper
fingerprinters.features.
FeatureMap
fingerprinters.features.
FeatureMapHelper
fingerprinters.
FingerPrinterFactory
tools.tree.trie.gml.
GMLEdge
tools.tree.trie.gml.
GMLGraph
tools.tree.trie.gml.
GMLNode
tools.tree.trie.pattern.
HashedPattern
(implements tools.tree.trie.pattern.
InterfacePattern
)
tools.tree.trie.pattern.
HashedPatternConstants
tools.progressbar.
isTTY_Java16only
io.
JarInput
executable.
jCMapper
tools.algorithms.
KSubsetsRecursive
distance.
MatrixCalculator
io.reader.
MoleculePreprocessor
fingerprinters.features.
NumericStringFeature
(implements fingerprinters.features.
IFeature
)
tools.tree.trie.pattern.
Pattern
(implements tools.tree.trie.pattern.
InterfacePattern
)
tools.tree.trie.pattern.
PatternContainer
tools.tree.trie.pattern.
PatternGenerator
tools.tree.trie.pattern.
PatternString
(implements tools.tree.trie.pattern.
InterfacePattern
)
tools.moltyping.
PharmacophorePointAssigner
tools.moltyping.pharmacophore.
PotentialPharmacophorePoint
(implements java.lang.Comparable<T>)
tools.moltyping.pharmacophore.
PotentialPharmacophorePointPair
tools.moltyping.pharmacophore.
PPPDefinitionFileReader
java.io.RandomAccessFile (implements java.io.Closeable, java.io.DataInput, java.io.DataOutput)
io.reader.
BufferedRandomAccessFile
io.reader.
RandomAccessMDLReader
java.lang.Thread (implements java.lang.Runnable)
io.reader.
RandomAccessMDLReader.ParseThread
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
fingerprinters.
FingerPrinterException
tools.moltyping.
MoltyperException
tools.tree.trie.
Trie
(implements java.lang.Cloneable, java.io.Serializable)
tools.tree.trie.
TrieFeatureMap
tools.tree.trie.
Trie.IdManager
tools.tree.trie.
TrieNode
(implements java.lang.Cloneable, java.io.Serializable)
tools.tree.trie.
TrieResultContainer
tools.progressbar.
Utils
Interface Hierarchy
java.lang.Comparable<T>
fingerprinters.features.
IFeature
distance.
IDistanceMeasure
io.writer.
IExporter
tools.tree.trie.pattern.
InterfacePattern
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
fingerprinters.
FingerPrinterFactory.FingerprintType
fingerprinters.
FingerPrinterException.ErrorCode
tools.moltyping.enumerations.
EnumerationsDistanceType.DistanceMeasure
tools.moltyping.enumerations.
EnumerationsBondType.BondLabelType
tools.moltyping.enumerations.
EnumerationsAtomTypes.AtomLabelType
io.writer.
ExporterFactory.ExporterType
distance.
DistanceFactory.DistanceType
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