Uses of Interface
fingerprinters.features.IFeature

Packages that use IFeature
fingerprinters   
fingerprinters.features   
fingerprinters.geometrical   
fingerprinters.topological   
fingerprinters.topological.features   
 

Uses of IFeature in fingerprinters
 

Methods in fingerprinters that return types with arguments of type IFeature
abstract  java.util.List<IFeature> EncodingFingerprint.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.List<IFeature> CombinatorialPatternHelper.getFingerprint2Point(org.openscience.cdk.interfaces.IAtomContainer ac, int[][] matrix, int distanceCutoff, ExtendedAtomAndBondTyper typer)
          generates all possible patters between two atoms
 java.util.List<IFeature> CombinatorialPatternHelper.getFingerprint2PointPPP(org.openscience.cdk.interfaces.IAtomContainer ac, int[][] matrix, int distanceCutOff)
          returns all possible 2 point PPP patterns with max distanceCutOff.
 java.util.List<IFeature> CombinatorialPatternHelper.getFingerprint3Point(org.openscience.cdk.interfaces.IAtomContainer ac, int[][] matrix, int distanceCutoff, ExtendedAtomAndBondTyper typer)
          generates all possible patterns between three atoms
 java.util.List<IFeature> CombinatorialPatternHelper.getFingerprint3PointPPP(org.openscience.cdk.interfaces.IAtomContainer ac, int[][] matrix, int distanceCutOff)
          returns all possible 3 point PPP patterns with max distanceCutOff.
 

Uses of IFeature in fingerprinters.features
 

Classes in fingerprinters.features that implement IFeature
 class NumericStringFeature
           
 

Methods in fingerprinters.features that return types with arguments of type IFeature
 java.util.Set<IFeature> FeatureMap.getKeySet()
           
 

Methods in fingerprinters.features with parameters of type IFeature
 int NumericStringFeature.compareTo(IFeature o)
           
 double FeatureMap.getValue(IFeature key)
           
 

Constructor parameters in fingerprinters.features with type arguments of type IFeature
FeatureMap(java.util.List<IFeature> features)
           
 

Uses of IFeature in fingerprinters.geometrical
 

Methods in fingerprinters.geometrical that return types with arguments of type IFeature
 java.util.List<IFeature> Encoding3DAtomTriple.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.List<IFeature> Encoding3DMolprint.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 java.util.List<IFeature> Encoding3DPharmacophore2Point.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.List<IFeature> Encoding3DCATS.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.List<IFeature> Encoding3DPharmacophore3Point.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.List<IFeature> Encoding3DAtomPair.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 

Uses of IFeature in fingerprinters.topological
 

Methods in fingerprinters.topological that return types with arguments of type IFeature
 java.util.List<IFeature> Encoding2DPharmacophore2Point.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.List<IFeature> Encoding2DAtomPair.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.List<IFeature> Encoding2DSHEDKey.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.List<IFeature> Encoding2DAllShortestPath.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.List<IFeature> Encoding2DCATS.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.ArrayList<IFeature> Encoding2DExtendedConnectivity.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 java.util.List<IFeature> Encoding2DAllPaths.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.List<IFeature> Encoding2DMolprint.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer molecule)
           
 java.util.List<IFeature> Encoding2DAtomTriple.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.List<IFeature> Encoding2DPharmacophore3Point.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 java.util.ArrayList<IFeature> DepthFirstSearch.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
          Generates a fingerprint of the default size for the given AtomContainer.
 java.util.ArrayList<IFeature> Encoding2DLocalAtomEnvironment.getFingerprint(org.openscience.cdk.interfaces.IAtomContainer ac)
           
 

Uses of IFeature in fingerprinters.topological.features
 

Classes in fingerprinters.topological.features that implement IFeature
 class ECFPFeature
           
 

Methods in fingerprinters.topological.features with parameters of type IFeature
 int ECFPFeature.compareTo(IFeature arg0)