AbstractProgressBar
BufferedRandomAccessFile
CombinatorialPatternHelper
ConstantsYEditColor
DanglingBond
DepthFirstSearch
DistanceFactory
DistanceFactory.DistanceType
DistanceMinMax
DistanceTanimoto
ECFPFeature
Encoding2D
Encoding2DAllPaths
Encoding2DAllShortestPath
Encoding2DAtomPair
Encoding2DAtomTriple
Encoding2DCATS
Encoding2DExtendedConnectivity
Encoding2DLocalAtomEnvironment
Encoding2DMolprint
Encoding2DPharmacophore2Point
Encoding2DPharmacophore3Point
Encoding2DSHEDKey
Encoding3D
Encoding3DAtomPair
Encoding3DAtomTriple
Encoding3DCATS
Encoding3DMolprint
Encoding3DPharmacophore2Point
Encoding3DPharmacophore3Point
EncodingFingerprint
EnumerationsAtomTypes
EnumerationsAtomTypes.AtomLabelType
EnumerationsBondType
EnumerationsBondType.BondLabelType
EnumerationsDistanceType
EnumerationsDistanceType.DistanceMeasure
ExporterBenchmark
ExporterFactory
ExporterFactory.ExporterType
ExporterFullFingerprintCSV
ExporterHashLinear
ExporterHashWeka
ExporterHelper
ExporterKeyWeka
ExporterLIBSVMMatrix
ExporterLIBSVMSparse
ExporterLinear
ExporterSparseString
ExtendedAtomAndBondTyper
FeatureMap
FeatureMapHelper
FingerPrinterException
FingerPrinterException.ErrorCode
FingerPrinterFactory
FingerPrinterFactory.FingerprintType
GMLEdge
GMLGraph
GMLNode
HashedPattern
HashedPatternConstants
IDistanceMeasure
IExporter
IFeature
InterfacePattern
isTTY_Java16only
JarInput
jCMapper
KSubsetsRecursive
MatrixCalculator
MoleculePreprocessor
MoltyperException
NumericStringFeature
Pattern
PatternContainer
PatternGenerator
PatternString
PharmacophorePointAssigner
PotentialPharmacophorePoint
PotentialPharmacophorePointPair
PPPDefinitionFileReader
ProgressBar
RandomAccessMDLReader
Trie
TrieFeatureMap
TrieNode
TrieResultContainer
Utils
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