Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
K
L
M
N
P
R
S
T
U
V
W
Y
P
parseCommandLine(String[], String, boolean)
- Static method in class tools.progressbar.
Utils
Usefull for parsing command line arguments.
Pattern
- Class in
tools.tree.trie.pattern
Pattern()
- Constructor for class tools.tree.trie.pattern.
Pattern
PatternContainer
- Class in
tools.tree.trie.pattern
PatternContainer()
- Constructor for class tools.tree.trie.pattern.
PatternContainer
PatternGenerator
- Class in
tools.tree.trie.pattern
PatternGenerator()
- Constructor for class tools.tree.trie.pattern.
PatternGenerator
PatternString
- Class in
tools.tree.trie.pattern
PatternString()
- Constructor for class tools.tree.trie.pattern.
PatternString
PharmacophorePointAssigner
- Class in
tools.moltyping
PharmacophorePointAssigner()
- Constructor for class tools.moltyping.
PharmacophorePointAssigner
PotentialPharmacophorePoint
- Class in
tools.moltyping.pharmacophore
PotentialPharmacophorePoint(String, String, String)
- Constructor for class tools.moltyping.pharmacophore.
PotentialPharmacophorePoint
PotentialPharmacophorePointPair
- Class in
tools.moltyping.pharmacophore
PotentialPharmacophorePointPair(PotentialPharmacophorePoint, int, PotentialPharmacophorePoint, int)
- Constructor for class tools.moltyping.pharmacophore.
PotentialPharmacophorePointPair
PPPDefinitionFileReader
- Class in
tools.moltyping.pharmacophore
PPPDefinitionFileReader()
- Constructor for class tools.moltyping.pharmacophore.
PPPDefinitionFileReader
prepareMoleculeConserveHydrogens(Molecule)
- Static method in class io.reader.
MoleculePreprocessor
types the molecule, leaves the hydrogens attached
prepareMoleculeRemoveHydrogens(Molecule)
- Static method in class io.reader.
MoleculePreprocessor
standard preparation protocol: remove hydrogens, types, ring detection
print()
- Method in class fingerprinters.features.
FeatureMap
printFeatureMapStatistics(List<FeatureMap>)
- Static method in class fingerprinters.features.
FeatureMapHelper
printInfo(double, double, double)
- Static method in class io.writer.
ExporterHelper
printMinMaxInfNaN(double[])
- Static method in class tools.progressbar.
Utils
ProgressBar
- Class in
tools.progressbar
Draws a nice graphical ASCII/ANSI Prograss bar on the console.
ProgressBar(int)
- Constructor for class tools.progressbar.
ProgressBar
Initialize the progressBar object
ProgressBar(long)
- Constructor for class tools.progressbar.
ProgressBar
Initialize the progressBar object
ProgressBar(int, boolean)
- Constructor for class tools.progressbar.
ProgressBar
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
K
L
M
N
P
R
S
T
U
V
W
Y