A B C D E F G H I J K L M N P R S T U V W Y

S

SANDY_BROWN - Static variable in class tools.tree.trie.gml.ConstantsYEditColor
 
saveObject(String, Object) - Static method in class tools.progressbar.Utils
 
seek(long) - Method in class io.reader.BufferedRandomAccessFile
 
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType) - Method in class fingerprinters.EncodingFingerprint
 
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType) - Method in class fingerprinters.geometrical.Encoding3DCATS
 
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType) - Method in class fingerprinters.geometrical.Encoding3DPharmacophore2Point
 
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType) - Method in class fingerprinters.geometrical.Encoding3DPharmacophore3Point
 
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType) - Method in class fingerprinters.topological.Encoding2DCATS
 
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType) - Method in class fingerprinters.topological.Encoding2DPharmacophore2Point
 
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType) - Method in class fingerprinters.topological.Encoding2DPharmacophore3Point
 
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType) - Method in class tools.moltyping.ExtendedAtomAndBondTyper
 
setAttribute(int) - Method in class tools.tree.trie.gml.GMLNode
 
setCallNr(long) - Method in class tools.progressbar.AbstractProgressBar
 
setChildren(ArrayList<TrieNode>) - Method in class tools.tree.trie.TrieNode
 
setColor(String) - Method in class tools.tree.trie.gml.GMLNode
 
setComment(String) - Method in class tools.tree.trie.gml.GMLGraph
 
setCount(int) - Method in class tools.tree.trie.pattern.PatternContainer
 
setCount(int) - Method in class tools.tree.trie.TrieNode
 
setDirected(int) - Method in class tools.tree.trie.gml.GMLGraph
 
setDistance(int) - Method in class tools.moltyping.pharmacophore.PotentialPharmacophorePointPair
 
setDistanceCutoff(double) - Method in class fingerprinters.geometrical.Encoding3D
 
setDistanceMeasure(IDistanceMeasure) - Method in class io.writer.ExporterLIBSVMMatrix
 
setDsimilarity(double) - Method in class tools.tree.trie.TrieResultContainer
 
setEstimateTime(boolean) - Method in class tools.progressbar.AbstractProgressBar
 
setFeature(boolean) - Method in class tools.tree.trie.TrieNode
 
setHashSpace(int) - Method in class io.writer.ExporterFullFingerprintCSV
 
setHashSpace(int) - Method in class io.writer.ExporterHashLinear
sets the dimension of the hash space
setId(int) - Method in class tools.tree.trie.gml.GMLGraph
 
setId(int) - Method in class tools.tree.trie.gml.GMLNode
 
setId(int) - Method in class tools.tree.trie.Trie.IdManager
 
setLabel(String) - Method in class fingerprinters.features.FeatureMap
 
setLabel(String) - Method in class tools.tree.trie.gml.GMLEdge
 
setLabel(String) - Method in class tools.tree.trie.gml.GMLGraph
 
setLabel(String) - Method in class tools.tree.trie.gml.GMLNode
 
setLabel(String) - Method in class tools.tree.trie.TrieNode
 
setLabelThreshold(int) - Method in class io.writer.ExporterHashWeka
 
setMaxAB(int) - Method in class tools.tree.trie.TrieResultContainer
 
setMinAB(int) - Method in class tools.tree.trie.TrieResultContainer
 
setNumberOfTotalCalls(long) - Method in class tools.progressbar.AbstractProgressBar
 
setNumericValue(double) - Method in class tools.tree.trie.pattern.PatternContainer
 
setNumlabel(int) - Method in class tools.tree.trie.TrieNode
 
setPattern(String) - Method in class tools.tree.trie.pattern.HashedPattern
 
setPattern(String) - Method in class tools.tree.trie.pattern.Pattern
 
setPattern(String) - Method in class tools.tree.trie.pattern.PatternString
 
setPatterns(ArrayList<InterfacePattern>) - Method in class tools.tree.trie.pattern.PatternContainer
 
setRemoveHydrogens(boolean) - Method in class io.reader.RandomAccessMDLReader
 
setSearchDepth(int) - Method in class fingerprinters.topological.Encoding2D
 
setSimilarity(int) - Method in class tools.tree.trie.TrieResultContainer
 
setSimilaritymeasure(IDistanceMeasure) - Method in class distance.MatrixCalculator
 
setSomevalue1(int) - Method in class tools.tree.trie.TrieResultContainer
 
setSomevalue2(int) - Method in class tools.tree.trie.TrieResultContainer
 
setSomevalue3(int) - Method in class tools.tree.trie.TrieResultContainer
 
setSomevalue4(double) - Method in class tools.tree.trie.TrieResultContainer
 
setSource(int) - Method in class tools.tree.trie.gml.GMLEdge
 
setStretchingFactor(double) - Method in class fingerprinters.geometrical.Encoding3D
 
setTarget(int) - Method in class tools.tree.trie.gml.GMLEdge
 
setUseBonds(boolean) - Method in class fingerprinters.topological.Encoding2DLocalAtomEnvironment
 
setWeight(Float) - Method in class tools.tree.trie.pattern.HashedPattern
 
setWeight(Float) - Method in interface tools.tree.trie.pattern.InterfacePattern
 
setWeight(Float) - Method in class tools.tree.trie.pattern.Pattern
 
setWeight(Float) - Method in class tools.tree.trie.pattern.PatternString
 
setWeight(Float) - Method in class tools.tree.trie.TrieNode
 
shutdownSystem() - Static method in class tools.progressbar.Utils
 

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