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SANDY_BROWN
- Static variable in class tools.tree.trie.gml.
ConstantsYEditColor
saveObject(String, Object)
- Static method in class tools.progressbar.
Utils
seek(long)
- Method in class io.reader.
BufferedRandomAccessFile
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType)
- Method in class fingerprinters.
EncodingFingerprint
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType)
- Method in class fingerprinters.geometrical.
Encoding3DCATS
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType)
- Method in class fingerprinters.geometrical.
Encoding3DPharmacophore2Point
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType)
- Method in class fingerprinters.geometrical.
Encoding3DPharmacophore3Point
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType)
- Method in class fingerprinters.topological.
Encoding2DCATS
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType)
- Method in class fingerprinters.topological.
Encoding2DPharmacophore2Point
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType)
- Method in class fingerprinters.topological.
Encoding2DPharmacophore3Point
setAtomLabelType(EnumerationsAtomTypes.AtomLabelType)
- Method in class tools.moltyping.
ExtendedAtomAndBondTyper
setAttribute(int)
- Method in class tools.tree.trie.gml.
GMLNode
setCallNr(long)
- Method in class tools.progressbar.
AbstractProgressBar
setChildren(ArrayList<TrieNode>)
- Method in class tools.tree.trie.
TrieNode
setColor(String)
- Method in class tools.tree.trie.gml.
GMLNode
setComment(String)
- Method in class tools.tree.trie.gml.
GMLGraph
setCount(int)
- Method in class tools.tree.trie.pattern.
PatternContainer
setCount(int)
- Method in class tools.tree.trie.
TrieNode
setDirected(int)
- Method in class tools.tree.trie.gml.
GMLGraph
setDistance(int)
- Method in class tools.moltyping.pharmacophore.
PotentialPharmacophorePointPair
setDistanceCutoff(double)
- Method in class fingerprinters.geometrical.
Encoding3D
setDistanceMeasure(IDistanceMeasure)
- Method in class io.writer.
ExporterLIBSVMMatrix
setDsimilarity(double)
- Method in class tools.tree.trie.
TrieResultContainer
setEstimateTime(boolean)
- Method in class tools.progressbar.
AbstractProgressBar
setFeature(boolean)
- Method in class tools.tree.trie.
TrieNode
setHashSpace(int)
- Method in class io.writer.
ExporterFullFingerprintCSV
setHashSpace(int)
- Method in class io.writer.
ExporterHashLinear
sets the dimension of the hash space
setId(int)
- Method in class tools.tree.trie.gml.
GMLGraph
setId(int)
- Method in class tools.tree.trie.gml.
GMLNode
setId(int)
- Method in class tools.tree.trie.
Trie.IdManager
setLabel(String)
- Method in class fingerprinters.features.
FeatureMap
setLabel(String)
- Method in class tools.tree.trie.gml.
GMLEdge
setLabel(String)
- Method in class tools.tree.trie.gml.
GMLGraph
setLabel(String)
- Method in class tools.tree.trie.gml.
GMLNode
setLabel(String)
- Method in class tools.tree.trie.
TrieNode
setLabelThreshold(int)
- Method in class io.writer.
ExporterHashWeka
setMaxAB(int)
- Method in class tools.tree.trie.
TrieResultContainer
setMinAB(int)
- Method in class tools.tree.trie.
TrieResultContainer
setNumberOfTotalCalls(long)
- Method in class tools.progressbar.
AbstractProgressBar
setNumericValue(double)
- Method in class tools.tree.trie.pattern.
PatternContainer
setNumlabel(int)
- Method in class tools.tree.trie.
TrieNode
setPattern(String)
- Method in class tools.tree.trie.pattern.
HashedPattern
setPattern(String)
- Method in class tools.tree.trie.pattern.
Pattern
setPattern(String)
- Method in class tools.tree.trie.pattern.
PatternString
setPatterns(ArrayList<InterfacePattern>)
- Method in class tools.tree.trie.pattern.
PatternContainer
setRemoveHydrogens(boolean)
- Method in class io.reader.
RandomAccessMDLReader
setSearchDepth(int)
- Method in class fingerprinters.topological.
Encoding2D
setSimilarity(int)
- Method in class tools.tree.trie.
TrieResultContainer
setSimilaritymeasure(IDistanceMeasure)
- Method in class distance.
MatrixCalculator
setSomevalue1(int)
- Method in class tools.tree.trie.
TrieResultContainer
setSomevalue2(int)
- Method in class tools.tree.trie.
TrieResultContainer
setSomevalue3(int)
- Method in class tools.tree.trie.
TrieResultContainer
setSomevalue4(double)
- Method in class tools.tree.trie.
TrieResultContainer
setSource(int)
- Method in class tools.tree.trie.gml.
GMLEdge
setStretchingFactor(double)
- Method in class fingerprinters.geometrical.
Encoding3D
setTarget(int)
- Method in class tools.tree.trie.gml.
GMLEdge
setUseBonds(boolean)
- Method in class fingerprinters.topological.
Encoding2DLocalAtomEnvironment
setWeight(Float)
- Method in class tools.tree.trie.pattern.
HashedPattern
setWeight(Float)
- Method in interface tools.tree.trie.pattern.
InterfacePattern
setWeight(Float)
- Method in class tools.tree.trie.pattern.
Pattern
setWeight(Float)
- Method in class tools.tree.trie.pattern.
PatternString
setWeight(Float)
- Method in class tools.tree.trie.
TrieNode
shutdownSystem()
- Static method in class tools.progressbar.
Utils
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