A B C D E F G H I J K L M N P R S T U V W Y

E

ECFPFeature - Class in fingerprinters.topological.features
 
ECFPFeature(int, IAtom, IMolecule, DanglingBond[], int) - Constructor for class fingerprinters.topological.features.ECFPFeature
 
Encoding2D - Class in fingerprinters.topological
 
Encoding2D() - Constructor for class fingerprinters.topological.Encoding2D
 
Encoding2D.PathFeature - Class in fingerprinters.topological
 
Encoding2D.PathFeature(List<IAtom>, IAtomContainer) - Constructor for class fingerprinters.topological.Encoding2D.PathFeature
 
Encoding2DAllPaths - Class in fingerprinters.topological
 
Encoding2DAllPaths() - Constructor for class fingerprinters.topological.Encoding2DAllPaths
 
Encoding2DAllShortestPath - Class in fingerprinters.topological
 
Encoding2DAllShortestPath() - Constructor for class fingerprinters.topological.Encoding2DAllShortestPath
 
Encoding2DAtomPair - Class in fingerprinters.topological
 
Encoding2DAtomPair() - Constructor for class fingerprinters.topological.Encoding2DAtomPair
 
Encoding2DAtomTriple - Class in fingerprinters.topological
 
Encoding2DAtomTriple() - Constructor for class fingerprinters.topological.Encoding2DAtomTriple
 
Encoding2DCATS - Class in fingerprinters.topological
 
Encoding2DCATS() - Constructor for class fingerprinters.topological.Encoding2DCATS
 
Encoding2DExtendedConnectivity - Class in fingerprinters.topological
 
Encoding2DExtendedConnectivity() - Constructor for class fingerprinters.topological.Encoding2DExtendedConnectivity
 
Encoding2DLocalAtomEnvironment - Class in fingerprinters.topological
 
Encoding2DLocalAtomEnvironment() - Constructor for class fingerprinters.topological.Encoding2DLocalAtomEnvironment
 
Encoding2DMolprint - Class in fingerprinters.topological
 
Encoding2DMolprint() - Constructor for class fingerprinters.topological.Encoding2DMolprint
 
Encoding2DPharmacophore2Point - Class in fingerprinters.topological
 
Encoding2DPharmacophore2Point() - Constructor for class fingerprinters.topological.Encoding2DPharmacophore2Point
 
Encoding2DPharmacophore3Point - Class in fingerprinters.topological
 
Encoding2DPharmacophore3Point() - Constructor for class fingerprinters.topological.Encoding2DPharmacophore3Point
 
Encoding2DSHEDKey - Class in fingerprinters.topological
 
Encoding2DSHEDKey() - Constructor for class fingerprinters.topological.Encoding2DSHEDKey
 
Encoding3D - Class in fingerprinters.geometrical
 
Encoding3D() - Constructor for class fingerprinters.geometrical.Encoding3D
 
Encoding3DAtomPair - Class in fingerprinters.geometrical
 
Encoding3DAtomPair() - Constructor for class fingerprinters.geometrical.Encoding3DAtomPair
 
Encoding3DAtomTriple - Class in fingerprinters.geometrical
 
Encoding3DAtomTriple() - Constructor for class fingerprinters.geometrical.Encoding3DAtomTriple
 
Encoding3DCATS - Class in fingerprinters.geometrical
 
Encoding3DCATS() - Constructor for class fingerprinters.geometrical.Encoding3DCATS
 
Encoding3DMolprint - Class in fingerprinters.geometrical
 
Encoding3DMolprint() - Constructor for class fingerprinters.geometrical.Encoding3DMolprint
 
Encoding3DPharmacophore2Point - Class in fingerprinters.geometrical
 
Encoding3DPharmacophore2Point() - Constructor for class fingerprinters.geometrical.Encoding3DPharmacophore2Point
 
Encoding3DPharmacophore3Point - Class in fingerprinters.geometrical
 
Encoding3DPharmacophore3Point() - Constructor for class fingerprinters.geometrical.Encoding3DPharmacophore3Point
 
EncodingFingerprint - Class in fingerprinters
 
EncodingFingerprint() - Constructor for class fingerprinters.EncodingFingerprint
 
ensureSlash(String) - Static method in class tools.progressbar.Utils
Ensures that path ends with a slash (for folder processing).
EnumerationsAtomTypes - Class in tools.moltyping.enumerations
 
EnumerationsAtomTypes() - Constructor for class tools.moltyping.enumerations.EnumerationsAtomTypes
 
EnumerationsAtomTypes.AtomLabelType - Enum in tools.moltyping.enumerations
 
EnumerationsBondType - Class in tools.moltyping.enumerations
 
EnumerationsBondType() - Constructor for class tools.moltyping.enumerations.EnumerationsBondType
 
EnumerationsBondType.BondLabelType - Enum in tools.moltyping.enumerations
 
EnumerationsDistanceType - Class in tools.moltyping.enumerations
 
EnumerationsDistanceType() - Constructor for class tools.moltyping.enumerations.EnumerationsDistanceType
 
EnumerationsDistanceType.DistanceMeasure - Enum in tools.moltyping.enumerations
 
equals(Object) - Method in interface fingerprinters.features.IFeature
 
equals(Object) - Method in class fingerprinters.features.NumericStringFeature
 
equals(Object) - Method in class fingerprinters.topological.features.ECFPFeature
 
equals(Object) - Method in class tools.moltyping.pharmacophore.PotentialPharmacophorePoint
 
equals(Object) - Method in class tools.moltyping.pharmacophore.PotentialPharmacophorePointPair
 
errorMessage() - Method in exception fingerprinters.FingerPrinterException
 
executable - package executable
 
export(RandomAccessMDLReader, EncodingFingerprint, String, File) - Method in class io.writer.ExporterBenchmark
 
export(RandomAccessMDLReader, EncodingFingerprint, String, File) - Method in class io.writer.ExporterFullFingerprintCSV
 
export(RandomAccessMDLReader, EncodingFingerprint, String, File) - Method in class io.writer.ExporterHashLinear
 
export(RandomAccessMDLReader, EncodingFingerprint, String, File) - Method in class io.writer.ExporterKeyWeka
 
export(RandomAccessMDLReader, EncodingFingerprint, String, File) - Method in class io.writer.ExporterLIBSVMMatrix
 
export(RandomAccessMDLReader, EncodingFingerprint, String, File) - Method in class io.writer.ExporterSparseString
 
export(RandomAccessMDLReader, EncodingFingerprint, String, File) - Method in interface io.writer.IExporter
 
ExporterBenchmark - Class in io.writer
 
ExporterBenchmark() - Constructor for class io.writer.ExporterBenchmark
 
ExporterFactory - Class in io.writer
 
ExporterFactory() - Constructor for class io.writer.ExporterFactory
 
ExporterFactory.ExporterType - Enum in io.writer
 
ExporterFullFingerprintCSV - Class in io.writer
 
ExporterFullFingerprintCSV() - Constructor for class io.writer.ExporterFullFingerprintCSV
 
ExporterFullFingerprintCSV(int) - Constructor for class io.writer.ExporterFullFingerprintCSV
 
ExporterHashLinear - Class in io.writer
 
ExporterHashLinear() - Constructor for class io.writer.ExporterHashLinear
 
ExporterHashLinear(int) - Constructor for class io.writer.ExporterHashLinear
 
ExporterHashWeka - Class in io.writer
 
ExporterHashWeka() - Constructor for class io.writer.ExporterHashWeka
 
ExporterHashWeka(int) - Constructor for class io.writer.ExporterHashWeka
 
ExporterHelper - Class in io.writer
 
ExporterHelper() - Constructor for class io.writer.ExporterHelper
 
ExporterKeyWeka - Class in io.writer
 
ExporterKeyWeka() - Constructor for class io.writer.ExporterKeyWeka
 
ExporterLIBSVMMatrix - Class in io.writer
 
ExporterLIBSVMMatrix() - Constructor for class io.writer.ExporterLIBSVMMatrix
 
ExporterLIBSVMSparse - Class in io.writer
 
ExporterLIBSVMSparse() - Constructor for class io.writer.ExporterLIBSVMSparse
 
ExporterLIBSVMSparse(int) - Constructor for class io.writer.ExporterLIBSVMSparse
 
ExporterLinear - Class in io.writer
 
ExporterLinear() - Constructor for class io.writer.ExporterLinear
 
ExporterSparseString - Class in io.writer
 
ExporterSparseString() - Constructor for class io.writer.ExporterSparseString
 
ExporterSparseString(int) - Constructor for class io.writer.ExporterSparseString
 
ExtendedAtomAndBondTyper - Class in tools.moltyping
 
ExtendedAtomAndBondTyper(EnumerationsAtomTypes.AtomLabelType) - Constructor for class tools.moltyping.ExtendedAtomAndBondTyper
 

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