A B C D E F G H I J K L M N P R S T U V W Y

C

clone() - Method in class tools.tree.trie.Trie
returns a clone of this trie
clone() - Method in class tools.tree.trie.TrieNode
 
CombinatorialPatternHelper - Class in fingerprinters
 
CombinatorialPatternHelper() - Constructor for class fingerprinters.CombinatorialPatternHelper
 
compareTo(IFeature) - Method in class fingerprinters.features.NumericStringFeature
 
compareTo(DepthFirstSearch.DepthFirstSearchFeature) - Method in class fingerprinters.topological.DepthFirstSearch.DepthFirstSearchFeature
 
compareTo(IFeature) - Method in class fingerprinters.topological.features.ECFPFeature
 
compareTo(PotentialPharmacophorePoint) - Method in class tools.moltyping.pharmacophore.PotentialPharmacophorePoint
 
compareTo(HashedPattern) - Method in class tools.tree.trie.pattern.HashedPattern
 
compareTo(Pattern) - Method in class tools.tree.trie.pattern.Pattern
 
compareTo(PatternString) - Method in class tools.tree.trie.pattern.PatternString
 
complement(String) - Static method in class tools.progressbar.Utils
 
computeCorrelation(double[], double[], double, double) - Static method in class tools.progressbar.Utils
Empirical Correlation Coefficient computes the correlation coefficient between y (lables) and x (predictions)
computeDistanceMatrix(IAtomContainer) - Method in class fingerprinters.geometrical.Encoding3D
computes the distance matrix of all atoms corrected by stretching factor and mathematically rounded
computeMatrix(List<FeatureMap>) - Method in class distance.MatrixCalculator
 
computeMinMaxDistance(FeatureMap) - Method in class fingerprinters.features.FeatureMap
 
computePercentMatch(Trie) - Method in class tools.tree.trie.Trie
computes the percent match of this trie onto the other tree
computeSimilarityMin(Trie) - Method in class tools.tree.trie.Trie
returns the minmax similarity for a pair of tries
computeSimilaritySpectrum(Trie) - Method in class tools.tree.trie.Trie
returns the spectrum similarity of two trees
computeSimilaritySpectrumWeighted(Trie) - Method in class tools.tree.trie.Trie
returns the spectrum similarity of two trees
computeSimilarityTanimoto(Trie) - Method in class tools.tree.trie.Trie
returns the Tanimoto similarity for this pair of tries
computeTanimotoCoefficient(FeatureMap) - Method in class fingerprinters.features.FeatureMap
 
ConstantsYEditColor - Class in tools.tree.trie.gml
 
ConstantsYEditColor() - Constructor for class tools.tree.trie.gml.ConstantsYEditColor
 
containsWord(String, String) - Static method in class tools.progressbar.Utils
Same as isWord !!!
copyFile(File, File) - Static method in class tools.progressbar.Utils
Copies a file.
countNucleotides(String, int) - Static method in class tools.progressbar.Utils
 
cut(double) - Static method in class tools.progressbar.Utils
Cut at dot.

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