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clone()
- Method in class tools.tree.trie.
Trie
returns a clone of this trie
clone()
- Method in class tools.tree.trie.
TrieNode
CombinatorialPatternHelper
- Class in
fingerprinters
CombinatorialPatternHelper()
- Constructor for class fingerprinters.
CombinatorialPatternHelper
compareTo(IFeature)
- Method in class fingerprinters.features.
NumericStringFeature
compareTo(DepthFirstSearch.DepthFirstSearchFeature)
- Method in class fingerprinters.topological.
DepthFirstSearch.DepthFirstSearchFeature
compareTo(IFeature)
- Method in class fingerprinters.topological.features.
ECFPFeature
compareTo(PotentialPharmacophorePoint)
- Method in class tools.moltyping.pharmacophore.
PotentialPharmacophorePoint
compareTo(HashedPattern)
- Method in class tools.tree.trie.pattern.
HashedPattern
compareTo(Pattern)
- Method in class tools.tree.trie.pattern.
Pattern
compareTo(PatternString)
- Method in class tools.tree.trie.pattern.
PatternString
complement(String)
- Static method in class tools.progressbar.
Utils
computeCorrelation(double[], double[], double, double)
- Static method in class tools.progressbar.
Utils
Empirical Correlation Coefficient computes the correlation coefficient between y (lables) and x (predictions)
computeDistanceMatrix(IAtomContainer)
- Method in class fingerprinters.geometrical.
Encoding3D
computes the distance matrix of all atoms corrected by stretching factor and mathematically rounded
computeMatrix(List<FeatureMap>)
- Method in class distance.
MatrixCalculator
computeMinMaxDistance(FeatureMap)
- Method in class fingerprinters.features.
FeatureMap
computePercentMatch(Trie)
- Method in class tools.tree.trie.
Trie
computes the percent match of this trie onto the other tree
computeSimilarityMin(Trie)
- Method in class tools.tree.trie.
Trie
returns the minmax similarity for a pair of tries
computeSimilaritySpectrum(Trie)
- Method in class tools.tree.trie.
Trie
returns the spectrum similarity of two trees
computeSimilaritySpectrumWeighted(Trie)
- Method in class tools.tree.trie.
Trie
returns the spectrum similarity of two trees
computeSimilarityTanimoto(Trie)
- Method in class tools.tree.trie.
Trie
returns the Tanimoto similarity for this pair of tries
computeTanimotoCoefficient(FeatureMap)
- Method in class fingerprinters.features.
FeatureMap
ConstantsYEditColor
- Class in
tools.tree.trie.gml
ConstantsYEditColor()
- Constructor for class tools.tree.trie.gml.
ConstantsYEditColor
containsWord(String, String)
- Static method in class tools.progressbar.
Utils
Same as
isWord
!!!
copyFile(File, File)
- Static method in class tools.progressbar.
Utils
Copies a file.
countNucleotides(String, int)
- Static method in class tools.progressbar.
Utils
cut(double)
- Static method in class tools.progressbar.
Utils
Cut at dot.
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